Neuroscience Resources

Apr 30, 2022

Software

Two-photon imaging analysis

Suite2p - Image processing
MLspike - Spike detection, works well for Purkinje cell dendrites

Electrophysiology analysis

Kilosort - Spike sorting
Phy - Ephys data curation
NPyx - Ephys data analysis (designed for Neuropixels)

Interpretting your data

GLMnet - Generalized Linear Model fitting software
Check out Jonathan Pillow’s lecture at Cosyne 2018 for a good primer

Textbooks

Spikes - pretty accessible computational neuro book
Foundations of Cellular Neurophyisiology - best cellular neurophysiology book
Dendrites - ‘The fundamental computational units of the nervous system’
The Cerebellum as a Neuronal Machine - classic

Fun stuff